STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2390Undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; KEGG: dol:Dole_1174 bacitracin resistance protein BacA; IMG reference gene:2503008110; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP. (276 aa)    
Predicted Functional Partners:
Dalk_3161
KEGG: dol:Dole_0478 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; IMG reference gene:2503008890; PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase.
  
  
 0.937
Dalk_3134
KEGG: gme:Gmet_0409 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase family 4; phospho-N-acetylmuramoyl-pentapeptide transferase; IMG reference gene:2503008863; PFAM: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1; Glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase.
    
 0.856
Dalk_2389
Phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: dol:Dole_1175 phosphomannomutase; IMG reference gene:2503008109; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.
     
 0.754
Dalk_4376
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: dol:Dole_2585 beta-lactamase domain-containing protein; IMG reference gene:2503010124; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; TIGRFAM: conserved hypothetical protein.
      0.637
Dalk_0708
PFAM: glycosyl transferase family 4; KEGG: sru:SRU_0621 glycosyltransferase; IMG reference gene:2503006409; PFAM: Glycosyl transferase family 4.
    
 0.628
Dalk_0570
KEGG: dol:Dole_0084 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; IMG reference gene:2503006271; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming.
 
     0.529
Dalk_2388
PFAM: major facilitator superfamily MFS_1; KEGG: dol:Dole_1430 major facilitator transporter; IMG reference gene:2503008108; PFAM: Major Facilitator Superfamily.
  
  
 0.511
Dalk_2391
KEGG: sru:SRU_1321 hypothetical protein; IMG reference gene:2503008111.
       0.502
Dalk_0914
TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: dol:Dole_0083 queuosine biosynthesis protein; IMG reference gene:2503006615; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase.
 
   
 0.492
Dalk_5040
TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: dol:Dole_0374 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase; IMG reference gene:2503010799; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family.
 
   
 0.476
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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