STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2445KEGG: dol:Dole_1002 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase; IMG reference gene:2503008166; PFAM: ATP-sulfurylase; TIGRFAM: ATP sulphurylase. (424 aa)    
Predicted Functional Partners:
Dalk_1570
TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_0997 adenylylsulfate reductase, beta subunit; IMG reference gene:2503007280; PFAM: Adenosine-5'-phosphosulfate reductase beta subunit; TIGRFAM: adenosine phosphosulphate reductase, beta subunit.
 
 
 0.995
Dalk_1569
Adenylylsulfate reductase, alpha subunit; Catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; IMG reference gene:2503007279; PFAM: FAD binding domain; TIGRFAM: adenosine phosphosulphate reductase, alpha subunit.
 
 
 0.991
Dalk_1700
KEGG: dol:Dole_1013 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase; adenylylsulfate kinase; IMG reference gene:2503007410; PFAM: ATP-sulfurylase; Adenylylsulphate kinase; TIGRFAM: adenylylsulfate kinase (apsK); ATP sulphurylase.
 
 
0.991
Dalk_3774
KEGG: pth:PTH_2214 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; IMG reference gene:2503009518; PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase.
 
  
 0.901
Dalk_4798
TIGRFAM: sulfurtransferase DndC; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: mab:MAB_1095 hypothetical protein; IMG reference gene:2503010555; PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: putative sulfurtransferase DndC.
 
 
 0.860
ACL06294.1
KEGG: efa:EF2332 hypothetical protein; tmRNA as predicted by Rfam (RF00023), score 224.03; IMG reference gene:2503010372; PFAM: Phosphoadenosine phosphosulfate reductase family.
  
 
 0.841
Dalk_4009
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dol:Dole_3062 uroporphyrin-III C-methyltransferase; IMG reference gene:2503009754; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; Uroporphyrinogen-III synthase HemD; TIGRFAM: uroporphyrin-III C-methyltransferase.
  
  
 0.774
Dalk_1567
Quinone-interacting membrane-bound oxidoreductase, QmoB; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; FAD dependent oxidoreductase; KEGG: dol:Dole_1000 methyl-viologen-reducing hydrogenase delta subunit; IMG reference gene:2503007277; PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; FAD dependent oxidoreductase.
 
   
 0.764
Dalk_4300
KEGG: dde:Dde_0527 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; IMG reference gene:2503010048; PFAM: Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit.
  
   
 0.695
Dalk_4301
KEGG: dol:Dole_2669 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; IMG reference gene:2503010049; PFAM: Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit.
  
   
 0.690
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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