STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2733PFAM: high-affinity nickel-transporter; KEGG: dde:Dde_0285 ABC-type uncharacterized transport system permease component-like; IMG reference gene:2503008456; PFAM: High-affinity nickel-transport protein. (331 aa)    
Predicted Functional Partners:
Dalk_2734
KEGG: dde:Dde_0284 ABC-type uncharacterized transport system periplasmic component-like; IMG reference gene:2503008457; PFAM: Protein of unknown function (DUF1007).
 
   
 0.955
Dalk_2735
Hypothetical protein Dalk_2735; IMG reference gene:2503008458.
       0.524
Dalk_3003
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dol:Dole_1876 heavy metal translocating P-type ATPase; IMG reference gene:2503008730; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; copper ion binding protei [...]
     
 0.461
Dalk_2732
PFAM: regulatory protein MarR; iron dependent repressor; KEGG: sfu:Sfum_3768 iron (metal) dependent repressor, DtxR family; IMG reference gene:2503008455; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain.
       0.452
Dalk_3021
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sde:Sde_1211 2-dehydro-3-deoxyphosphooctonate aldolase; IMG reference gene:2503008748; PFAM: L,D-transpeptidase catalytic domain.
 
     0.447
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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