STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3800KEGG: mag:amb3592 ABC-type branched-chain amino acid transport systems, periplasmic component; IMG reference gene:2503009544; PFAM: Receptor family ligand binding region. (419 aa)    
Predicted Functional Partners:
Dalk_3801
PFAM: inner-membrane translocator; KEGG: det:DET0944 high-affinity branched-chain amino acid ABC transporter, permease protein, putative; IMG reference gene:2503009545; PFAM: Branched-chain amino acid transport system / permease component.
 
 
 0.996
Dalk_3802
PFAM: inner-membrane translocator; KEGG: sth:STH705 branched-chain amino acid ABC transporter permease protein; IMG reference gene:2503009546; PFAM: Branched-chain amino acid transport system / permease component.
 
 
 0.996
Dalk_3799
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cau:Caur_1081 ABC transporter related; IMG reference gene:2503009543; PFAM: ABC transporter.
 
 
 0.956
Dalk_3804
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_0622 ABC transporter related; IMG reference gene:2503009548; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter.
 
 
 0.944
Dalk_3803
Long-chain-fatty-acid CoA ligase (AMP-forming); PFAM: AMP-dependent synthetase and ligase; KEGG: rrs:RoseRS_0623 AMP-dependent synthetase and ligase; IMG reference gene:2503009547; PFAM: AMP-binding enzyme.
 
    0.887
Dalk_3504
PFAM: inner-membrane translocator; KEGG: dol:Dole_3011 inner-membrane translocator; IMG reference gene:2503009236; PFAM: Branched-chain amino acid transport system / permease component.
 
 
 0.840
Dalk_0069
PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3500 inner-membrane translocator; IMG reference gene:2503005764; PFAM: Branched-chain amino acid transport system / permease component.
 
 
 0.823
Dalk_3501
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dol:Dole_3008 ABC transporter-related protein; IMG reference gene:2503009233; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter.
 
 
 0.773
Dalk_0523
PFAM: GAF domain protein; ANTAR domain protein; KEGG: dol:Dole_2264 putative GAF sensor protein; IMG reference gene:2503006223; PFAM: GAF domain; ANTAR domain.
  
 
 0.771
Dalk_0068
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll7930 ABC transporter ATP-binding protein; IMG reference gene:2503005763; PFAM: ABC transporter.
 
 
 0.740
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.