STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4125KEGG: pdi:BDI_0843 hypothetical protein; IMG reference gene:2503009871. (375 aa)    
Predicted Functional Partners:
Dalk_4124
SMART: AAA ATPase; KEGG: det:DET1320 hypothetical protein; IMG reference gene:2503009870.
       0.773
Dalk_4123
Radical SAM domain protein; PFAM: TPR repeat-containing protein; cobalamin B12-binding domain protein; Radical SAM domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Elongator protein 3/MiaB/NifB; Tetratricopeptide domain protein; KEGG: gme:Gmet_1171 radical SAM family protein; IMG reference gene:2503009869; PFAM: Radical SAM superfamily; Tetratricopeptide repeat; B12 binding domain.
       0.559
Dalk_4126
PFAM: GCN5-related N-acetyltransferase; KEGG: jan:Jann_3325 GCN5-related N-acetyltransferase; IMG reference gene:2503009872; PFAM: Acetyltransferase (GNAT) family.
       0.465
Dalk_0476
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: gbm:Gbem_1545 transcriptional regulator, XRE family; IMG reference gene:2503006176; PFAM: Helix-turn-helix.
    
   0.432
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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