STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4135TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: dol:Dole_0100 ribonuclease P protein component; IMG reference gene:2503009881; PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial. (118 aa)    
Predicted Functional Partners:
Dalk_4136
Ribosomal protein L34; In Escherichia coli transcription of this gene is enhanced by polyamines; IMG reference gene:2503009882; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type.
  
  
 0.988
Dalk_4133
TIGRFAM: YidC translocase/secretase; PFAM: 60 kDa inner membrane insertion protein; KEGG: dol:Dole_0102 60 kDa inner membrane insertion protein; IMG reference gene:2503009879; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain.
  
  
 0.978
Dalk_4134
PFAM: protein of unknown function DUF37; KEGG: smt:Smal_2735 protein of unknown function DUF37; IMG reference gene:2503009880; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD.
  
  
 0.976
Dalk_4132
PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: dol:Dole_0103 single-stranded nucleic acid binding R3H domain-containing protein; IMG reference gene:2503009878; PFAM: R3H domain.
 
  
 0.920
Dalk_1914
PFAM: ribosomal protein L4/L1e; KEGG: dol:Dole_0709 ribosomal protein L4/L1e; IMG reference gene:2503007626; PFAM: Ribosomal protein L4/L1 family; TIGRFAM: 50S ribosomal protein L4, bacterial/organelle.
   
  
 0.913
Dalk_1916
PFAM: ribosomal protein S10; KEGG: dol:Dole_0707 ribosomal protein S10; IMG reference gene:2503007628; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle.
   
  
 0.908
Dalk_1915
PFAM: ribosomal protein L3; KEGG: dol:Dole_0708 ribosomal protein L3; IMG reference gene:2503007627; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial.
   
  
 0.907
Dalk_1919
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; IMG reference gene:2503007631; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle.
   
    0.903
Dalk_5215
KEGG: sfu:Sfum_1711 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor domain protein; Rho termination factor RNA-binding; Ribonuclease B OB region domain; SMART: AAA ATPase; Cold shock protein; IMG reference gene:2503010974; PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho.
 
  
 0.897
Dalk_1195
PFAM: ribosomal protein S20; KEGG: sfu:Sfum_2087 ribosomal protein S20; IMG reference gene:2503006897; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20.
  
    0.893
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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