STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4202PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: dde:Dde_3339 hypothetical protein; IMG reference gene:2503009949; PFAM: Glutathione-dependent formaldehyde-activating enzyme. (135 aa)    
Predicted Functional Partners:
Dalk_3314
KEGG: dol:Dole_2077 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; IMG reference gene:2503009044; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase.
    
  0.717
Dalk_4295
PFAM: glucose-methanol-choline oxidoreductase; KEGG: mxa:MXAN_5165 GMC oxidoreductase family protein; IMG reference gene:2503010043; PFAM: GMC oxidoreductase.
  
  
  0.540
Dalk_1466
Alcohol dehydrogenase, zinc-containing; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dol:Dole_1324 alcohol dehydrogenase; IMG reference gene:2503007175; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase.
  
  
  0.520
Dalk_0198
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: sfu:Sfum_1398 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IMG reference gene:2503005893; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Rhodanese-like domain.
    
 0.488
Dalk_4233
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dps:DP0550 NADH oxidase; IMG reference gene:2503009980; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain.
    
 0.488
Dalk_4203
PFAM: AMP-dependent synthetase and ligase; KEGG: afw:Anae109_1649 AMP-dependent synthetase and ligase; IMG reference gene:2503009950; PFAM: AMP-binding enzyme.
       0.462
Dalk_0085
PFAM: Pyrrolo-quinoline quinone; KEGG: mac:MA1904 hypothetical protein; IMG reference gene:2503005780.
     
 0.450
Dalk_1608
Hypothetical protein Dalk_1608; KEGG: rba:RB6459 aggregation factor core protein MAFp3, isoform E; IMG reference gene:2503007318.
     
 0.450
Dalk_2130
PFAM: Fibronectin type III domain protein; KEGG: mma:MM_0214 hypothetical protein; IMG reference gene:2503007850; PFAM: Fibronectin type III domain; TIGRFAM: 40-residue YVTN family beta-propeller repeat.
     
 0.450
Dalk_2289
PFAM: PKD domain containing protein; NHL repeat containing protein; SMART: LamG domain protein jellyroll fold domain protein; KEGG: mac:MA4315 cell surface protein; IMG reference gene:2503008009; PFAM: NHL repeat; PKD domain.
     
 0.450
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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