STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4656KEGG: dol:Dole_0012 integrin-like repeat-containing protein; IMG reference gene:2503010412; PFAM: Curli production assembly/transport component CsgG. (551 aa)    
Predicted Functional Partners:
Dalk_0649
PFAM: response regulator receiver; GAF domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: sfu:Sfum_3292 response regulator receiver modulated metal dependent phosphohydrolase; IMG reference gene:2503006350; PFAM: HD domain; Response regulator receiver domain.
  
 
 0.757
Dalk_2930
KEGG: sfu:Sfum_3292 response regulator receiver modulated metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; IMG reference gene:2503008656; PFAM: HD domain; Response regulator receiver domain; TIGRFAM: uncharacterized domain HDIG.
  
 
 0.757
Dalk_1281
Adenylate/guanylate cyclase with GAF sensor(s); PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; KEGG: lbf:LBF_2448 adenylate/guanylate cyclase; IMG reference gene:2503006984; PFAM: Adenylate and Guanylate cyclase catalytic domain; GAF domain.
  
 
 0.741
Dalk_4220
Adenylate/guanylate cyclase with GAF sensor(s); PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; KEGG: amr:AM1_3189 adenylate cyclase, family 3; IMG reference gene:2503009967; PFAM: Adenylate and Guanylate cyclase catalytic domain; GAF domain.
  
 
 0.741
Dalk_3693
Adenylate/guanylate cyclase with TPR repeats; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: dol:Dole_0034 TPR repeat-containing adenylate/guanylate cyclase; IMG reference gene:2503009437; PFAM: Adenylate and Guanylate cyclase catalytic domain; CHASE2 domain; Tetratricopeptide repeat.
     
 0.740
Dalk_4218
Adenylate/guanylate cyclase with GAF sensor(s); PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; KEGG: pth:PTH_1596 hypothetical protein; IMG reference gene:2503009965; PFAM: Adenylate and Guanylate cyclase catalytic domain; GAF domain.
     
 0.739
Dalk_3696
Hypothetical protein Dalk_3696; KEGG: dol:Dole_0037 TPR repeat-containing protein; IMG reference gene:2503009440.
 
  
  0.737
Dalk_1554
KEGG: sat:SYN_00932 CoA pyrophosphatase; IMG reference gene:2503007264.
  
  
  0.721
Dalk_4319
KEGG: dol:Dole_2833 hypothetical protein; IMG reference gene:2503010067.
  
     0.703
Dalk_3852
KEGG: dol:Dole_2129 hypothetical protein; IMG reference gene:2503009596.
  
     0.690
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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