STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4743Polyribonucleotide nucleotidyltransferase; KEGG: dol:Dole_3029 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; IMG reference gene:2503010500; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; Polyribonucleotide nucleotidyltransferase, RNA binding domain; 3' exoribonuclease family, domain 2; TIGRFAM: polyribonucleotide nucleotidyltra [...] (712 aa)    
Predicted Functional Partners:
Dalk_0137
PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bfs:BF0134 putative RNA helicase dead-box protein; IMG reference gene:2503005832; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase.
 0.984
Dalk_2458
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: dol:Dole_2349 DEAD/DEAH box helicase domain-containing protein; IMG reference gene:2503008179; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase.
 
 0.984
Dalk_2316
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: gsu:GSU0522 ATP-dependent RNA helicase RhlB; IMG reference gene:2503008036; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase.
 0.983
Dalk_1192
TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease E and G; KEGG: dol:Dole_2439 ribonuclease; IMG reference gene:2503006894; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family.
  
 0.979
Dalk_4113
TIGRFAM: ribonuclease, Rne/Rng family; PFAM: ribonuclease E and G; KEGG: dol:Dole_0098 ribonuclease; IMG reference gene:2503009859; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family.
  
 0.979
Dalk_1912
Ribosomal protein L2; One of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; IMG reference gene:2503007624; PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar.
   
  0.978
Dalk_1924
PFAM: ribosomal protein L1; KEGG: dol:Dole_0699 ribosomal protein L1; IMG reference gene:2503007636; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast.
  
 
 0.974
Dalk_2764
Enolase (Phosphopyruvate hydratase); PFAM: enolase; KEGG: dol:Dole_0339 phosphopyruvate hydratase; IMG reference gene:2503008487; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase.
  
 0.971
Dalk_4737
NusA antitermination factor; Modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; IMG reference gene:2503010494; PFAM: NusA N-terminal domain; S1 RNA binding domain; TIGRFAM: transcription termination factor NusA; transcription termination factor NusA, C-terminal duplication.
 
  
 0.969
Dalk_4738
TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Miro domain protein; KEGG: dol:Dole_3035 translation initiation factor IF-2; IMG reference gene:2503010495; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2.
  
  
 0.967
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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