STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4910PFAM: dihydropteroate synthase DHPS; KEGG: dsy:DSY2719 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; IMG reference gene:2503010668; PFAM: Pterin binding enzyme. (269 aa)    
Predicted Functional Partners:
Dalk_4909
PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: afu:AF0011 corrinoid methyltransferase protein (MtaC-2); IMG reference gene:2503010667; PFAM: B12 binding domain.
 
 0.993
Dalk_2920
PFAM: Uroporphyrinogen decarboxylase (URO-D); cobalamin B12-binding domain protein; KEGG: mta:Moth_1447 cobalamin B12-binding; IMG reference gene:2503008646; PFAM: Uroporphyrinogen decarboxylase (URO-D); B12 binding domain; TIGRFAM: methyltransferase, MtaA/CmuA family.
 
 0.990
Dalk_0020
PFAM: Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: afu:AF0006 corrinoid methyltransferase protein (MtaC-1); IMG reference gene:2503005715; PFAM: B12 binding domain.
 
 0.985
Dalk_4197
PFAM: cobalamin B12-binding domain protein; KEGG: dol:Dole_0061 cobalamin B12-binding domain-containing protein; IMG reference gene:2503009944; PFAM: B12 binding domain.
 
 0.985
Dalk_4912
PFAM: cobalamin B12-binding domain protein; KEGG: afu:AF0006 corrinoid methyltransferase protein (MtaC-1); IMG reference gene:2503010670; PFAM: B12 binding domain.
 
 0.985
Dalk_0682
Bifunctional CO dehydrogenase/acetyl-CoA synthase gamma subunit; Part of a complex that catalyzes the cleavage of acetyl-CoA; IMG reference gene:2503006383; PFAM: Putative Fe-S cluster; CO dehydrogenase/acetyl-CoA synthase delta subunit.
  
 0.960
Dalk_0679
Bifunctional CO dehydrogenase/acetyl-CoA synthase delta subunit; Part of a complex that catalyzes the cleavage of acetyl-CoA; IMG reference gene:2503006380; PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit; TIGRFAM: CO dehydrogenase/acetyl-CoA synthase, delta subunit.
   
 0.949
Dalk_1375
PFAM: cobalamin B12-binding domain protein; KEGG: mta:Moth_1208 5-methyltetrahydrofolate--homocysteine S-methyltransferase; IMG reference gene:2503007080; PFAM: B12 binding domain.
 
 0.940
Dalk_1779
PFAM: methylenetetrahydrofolate reductase; KEGG: dol:Dole_2330 methylenetetrahydrofolate reductase (NAD(P)H); IMG reference gene:2503007490; PFAM: Methylenetetrahydrofolate reductase.
 
 
 0.932
Dalk_2505
Adenosylhomocysteinase; Catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; IMG reference gene:2503008226; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase.
    
 0.905
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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