STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4977KEGG: nth:Nther_2354 hypothetical protein; IMG reference gene:2503010736. (348 aa)    
Predicted Functional Partners:
Dalk_1139
Molecular chaperone GrpE (heat shock protein)-like protein; KEGG: cac:CAC0471 GrpE protein HSP-70 cofactor; IMG reference gene:2503006841; PFAM: GrpE.
  
 0.978
Dalk_3616
PFAM: GrpE protein; KEGG: pca:Pcar_0108 heat shock protein nucleotide exchange factor GrpE; IMG reference gene:2503009348; PFAM: GrpE.
  
 0.978
Dalk_4242
TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: dol:Dole_0550 chaperonin GroEL; IMG reference gene:2503009989; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL.
  
 0.978
Dalk_2790
PFAM: heat shock protein DnaJ domain protein; KEGG: dps:DP1703 heat shock protein DnaJ (HSP40); IMG reference gene:2503008513; PFAM: DnaJ domain; DnaJ C terminal region.
  
 0.967
Dalk_3206
TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dol:Dole_1492 chaperone protein DnaJ; IMG reference gene:2503008935; PFAM: DnaJ domain; DnaJ central domain (4 repeats); DnaJ C terminal region; TIGRFAM: chaperone protein DnaJ.
  
 0.967
Dalk_3239
PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dol:Dole_1422 chaperone DnaJ domain-containing protein; IMG reference gene:2503008968; PFAM: DnaJ domain; DnaJ C terminal region.
  
 0.967
Dalk_2817
PFAM: cytochrome c class III; KEGG: dde:Dde_3182 cytochrome c3; IMG reference gene:2503008541; PFAM: Class III cytochrome C family.
  
 0.962
Dalk_4187
KEGG: dol:Dole_3170 cytochrome c, class III; IMG reference gene:2503009934; PFAM: Class III cytochrome C family.
  
 0.962
Dalk_2169
PFAM: TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_2418 TPR repeat-containing protein; IMG reference gene:2503007889; PFAM: Tetratricopeptide repeat.
  
 0.931
Dalk_1908
Ribosomal protein L16; Located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; IMG reference gene:2503007620; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle.
   
 0.927
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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