STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_0416PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; KEGG: avi:Avi_5411 beta-galactosidase. (1027 aa)    
Predicted Functional Partners:
Bsel_0418
PFAM: glycoside hydrolase clan GH-D; KEGG: hypothetical protein.
 
 
 0.976
Bsel_2824
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.944
Bsel_2307
Glucokinase, ROK family; KEGG: ara:Arad_9637 transcriptional regulator protein; TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein.
    
 0.917
xylA
TIGRFAM: xylose isomerase; KEGG: Os07g0669100; hypothetical protein; K01805 xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
    
 0.820
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.782
Bsel_0930
1-phosphofructokinase; KEGG: dat:HRM2_08650 PfkB1; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.760
Bsel_0414
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pct:PC1_0737 binding-protein-dependent transport systems inner membrane component.
  
    0.683
Bsel_0415
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sml:Smlt3250 putative sugar transporter, permease protein.
       0.678
Bsel_0413
PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mlr6435 ABC transporter sugar binding protein.
 
     0.578
Bsel_0417
Transcriptional regulator, LacI family; KEGG: vfm:VFMJ11_A0386 DNA-binding transcriptional repressor EbgR; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.
 
   
 0.577
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.