STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oant_2854PFAM: protein of unknown function DUF849; KEGG: mlo:mll0106 hypothetical protein. (315 aa)    
Predicted Functional Partners:
Oant_2853
PFAM: aminotransferase class-III; KEGG: mlo:mll0107 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.866
Oant_2852
KEGG: mlo:mll0108 hypothetical protein.
 
     0.762
lcdH
3-hydroxyacyl-CoA dehydrogenase NAD-binding; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
  
 0.751
Oant_2851
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_2357 glutamine ABC transporter, ATP-binding protein.
       0.716
Oant_2850
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_2358 amino acid ABC transporter.
       0.715
Oant_2847
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sil:SPO2010 transcriptional regulator, LysR family.
 
     0.710
Oant_2849
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_2359 amino acid ABC transporter, permease protein.
       0.695
Oant_2856
PFAM: histone deacetylase superfamily; KEGG: mlo:mll0103 acetylpolyamine aminohydrolase.
 
     0.673
Oant_4027
PFAM: cyclase family protein; KEGG: mlo:mlr5444 hypothetical protein.
  
    0.589
Oant_2855
PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll0104 acetyltransferase.
       0.541
Your Current Organism:
Ochrobactrum anthropi
NCBI taxonomy Id: 439375
Other names: O. anthropi ATCC 49188, Ochrobactrum anthropi ATCC 49188, Ochrobactrum anthropi DSM 6882, Ochrobactrum anthropi LMG 3331, Ochrobactrum anthropi str. ATCC 49188, Ochrobactrum anthropi strain ATCC 49188
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