STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_874[R] COG0456 Acetyltransferases. (132 aa)    
Predicted Functional Partners:
RBY4I_263
Peptidase M22, glycoprotease; [O] COG0533 Metal-dependent proteases with possible chaperone activity.
 
 
 0.895
EDZ46628.1
NifU domain protein; [O] COG0694 Thioredoxin-like proteins and domains.
       0.751
EDZ47701.1
[R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.
       0.623
RBY4I_892
[T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
    0.560
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.533
EDZ48363.1
2-hydroxychromene-2-carboxylate isomerase family protein; [Q] COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis.
       0.489
RBY4I_286
DNA-binding protein; [K] COG1396 Predicted transcriptional regulators.
     
 0.436
EDZ47823.1
Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.
     
 0.436
EDZ48280.1
Transcriptional regulator, XRE family; [S] COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
     
 0.436
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
     
 0.435
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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