STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcB_1Aerobic respiration control sensor protein ArcB. (868 aa)    
Predicted Functional Partners:
cheR_1
Chemotaxis protein methyltransferase.
 0.999
walR_1
Transcriptional regulatory protein WalR.
0.999
cheR_3
Chemotaxis protein methyltransferase.
 0.999
fixL
Sensor protein FixL.
 
0.998
cph1_2
Phytochrome-like protein cph1.
0.998
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
0.998
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
 0.998
cph2
Bacteriophytochrome cph2.
 0.998
pdtaS_2
Putative sensor histidine kinase pdtaS.
 
 0.996
tar_3
Aspartate chemoreceptor protein.
 0.996
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.