STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH77873.1Hypothetical protein. (178 aa)    
Predicted Functional Partners:
CUH77875.1
Hypothetical protein.
 
    0.959
CUH77872.1
Flp pilus assembly protein TadG.
 
    0.952
CUH75707.1
Flp pilus assembly protein CpaB.
 
  
 0.900
minD_2
Cell division inhibitor MinD.
 
  
 0.881
CUH77862.1
Hypothetical protein.
 
    0.834
CUH75697.1
Flp pilus assembly protein TadB.
 
  
 0.819
CUH76266.1
Cell division protein FtsN.
 
     0.721
CUH75690.1
Flp pilus assembly protein, protease CpaA.
 
  
 0.720
CUH76813.1
Hypothetical protein.
  
    0.704
CUH76413.1
Hypothetical protein.
  
    0.699
Your Current Organism:
Tropicibacter naphthalenivorans
NCBI taxonomy Id: 441103
Other names: DSM 19561, JCM 14838, T. naphthalenivorans, Tropicibacter naphthalenivorans Harwati et al. 2009, alpha proteobacterium C02, strain C02
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