STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB72949.1Ribonuclease Z. (437 aa)    
Predicted Functional Partners:
SFB72928.1
Tfp pilus assembly protein PilF.
 
     0.789
SFC23639.1
Glycosyltransferase family 28 C-terminal domain-containing protein.
  
     0.732
SFB72982.1
HupE / UreJ protein.
 
     0.728
SFD28992.1
Hypothetical protein.
    
   0.719
SFB73735.1
DNA-binding transcriptional regulator, MarR family.
  
     0.673
SFC71667.1
Hypothetical protein.
  
     0.663
SFD18971.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.660
SFB85597.1
Uncharacterised nucleotidyltransferase.
  
     0.652
SFC72462.1
Hypothetical protein.
  
     0.610
SFB72967.1
Hypothetical protein.
       0.592
Your Current Organism:
Tropicimonas isoalkanivorans
NCBI taxonomy Id: 441112
Other names: DSM 19548, JCM 14837, T. isoalkanivorans, Tropicimonas isoalkanivorans Harwati et al. 2009, alpha proteobacterium B51, strain B51
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