STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG454_12430Unannotated protein. (513 aa)    
Predicted Functional Partners:
BG454_12435
Unannotated protein; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
 
     0.942
BG454_08730
Unannotated protein.
    
 
 0.792
rplF
Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.647
GCA_001870665_02265
Unannotated protein.
       0.620
BG454_02850
Unannotated protein.
  
 
 0.592
BG454_08610
Unannotated protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.592
BG454_14565
Unannotated protein.
  
 
 0.592
rplM
Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
    
 
 0.587
rplC
Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
 
 0.582
rplO
Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.574
Your Current Organism:
Rhodobaca barguzinensis
NCBI taxonomy Id: 441209
Other names: DSM 19920, R. barguzinensis, Rhodobaca barguzinensis Boldareva et al. 2009, VKM B-2406, strain alga-05, strain alga05
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.