STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mpop_0021KEGG: mex:Mext_0219 hypothetical protein. (175 aa)    
Predicted Functional Partners:
Mpop_0018
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mex:Mext_0216 4Fe-4S ferredoxin iron-sulfur binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.964
Mpop_0020
KEGG: mex:Mext_0218 hypothetical protein.
 
  
 0.956
Mpop_0017
KEGG: mex:Mext_0215 chaperone protein HtpG.
 
   
 0.954
Mpop_0019
PFAM: Polysulphide reductase NrfD; KEGG: mex:Mext_0217 polysulphide reductase NrfD.
 
   
 0.953
Mpop_0022
KEGG: mex:Mext_0220 hypothetical protein.
 
    0.952
Mpop_0024
TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: mex:Mext_0222 cytochrome c oxidase, subunit II.
 
   
 0.952
Mpop_0023
KEGG: mex:Mext_0221 hypothetical protein.
 
     0.933
Mpop_0026
PFAM: cytochrome c oxidase subunit III; KEGG: mex:Mext_0224 cytochrome c oxidase subunit III.
 
   
 0.903
Mpop_0025
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
  
 0.849
Mpop_4973
KEGG: mex:Mext_4459 hypothetical protein.
 
   
 0.802
Your Current Organism:
Methylorubrum populi
NCBI taxonomy Id: 441620
Other names: M. populi BJ001, Methylobacterium populi BJ001, Methylobacterium sp. BJ001, Methylorubrum populi BJ001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.