STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mpop_1067KEGG: scl:sce2139 hypothetical protein. (609 aa)    
Predicted Functional Partners:
Mpop_5162
PFAM: condensation domain protein; phosphopantetheine-binding; KEGG: mex:Mext_4624 aspartate racemase.
  
    0.788
Mpop_1068
KEGG: neu:NE0315 possible multicopper oxidase.
       0.785
Mpop_1066
Conserved hypothetical protein; KEGG: pfo:Pfl_1977 electron transport protein SCO1/SenC.
       0.778
Mpop_1065
Hypothetical protein; KEGG: pen:PSEEN2851 cytochrome c.
  
    0.777
Mpop_0900
PFAM: Di-haem cytochrome c peroxidase; KEGG: bra:BRADO0674 putative di-haem cytochrome c peroxidase.
  
 
 0.548
Mpop_2895
PFAM: Di-haem cytochrome c peroxidase; KEGG: mex:Mext_2772 cytochrome-c peroxidase.
  
 
 0.548
Mpop_3699
PFAM: Di-haem cytochrome c peroxidase; KEGG: swi:Swit_1193 cytochrome-c peroxidase.
  
 
 0.548
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.481
Mpop_1021
TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain protein; KEGG: mex:Mext_1087 pseudoazurin.
   
   0.468
Mpop_2896
KEGG: mex:Mext_2773 hypothetical protein.
   
   0.468
Your Current Organism:
Methylorubrum populi
NCBI taxonomy Id: 441620
Other names: M. populi BJ001, Methylobacterium populi BJ001, Methylobacterium sp. BJ001, Methylorubrum populi BJ001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.