STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mpop_3313KEGG: mex:Mext_3118 cyclic peptide transporter; TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase. (558 aa)    
Predicted Functional Partners:
Mpop_5162
PFAM: condensation domain protein; phosphopantetheine-binding; KEGG: mex:Mext_4624 aspartate racemase.
 
  
 0.850
Mpop_5163
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: mex:Mext_4625 amino acid adenylation domain protein.
 
  
 0.793
Mpop_4653
PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: bxe:Bxe_C1049 TonB-dependent siderophore receptor.
 
  
 0.672
Mpop_1141
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mex:Mext_1202 TonB-dependent siderophore receptor.
  
     0.566
Mpop_3808
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mex:Mext_4886 TonB-dependent siderophore receptor.
 
  
 0.566
Mpop_1838
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: mex:Mext_1947 beta-ketoacyl synthase.
  
  
 0.557
Mpop_4225
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mex:Mext_1202 TonB-dependent siderophore receptor.
  
     0.533
Mpop_1676
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sme:SMc01657 putative ferrichrome-iron receptor precursor protein.
 
  
 0.529
Mpop_4602
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mex:Mext_4121 TonB-dependent siderophore receptor.
 
  
 0.516
Mpop_4645
PFAM: FecR protein; KEGG: dac:Daci_3275 anti-FecI sigma factor, FecR.
 
   
 0.516
Your Current Organism:
Methylorubrum populi
NCBI taxonomy Id: 441620
Other names: M. populi BJ001, Methylobacterium populi BJ001, Methylobacterium sp. BJ001, Methylorubrum populi BJ001
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.