STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mpop_4743PFAM: plasmid stabilization system; KEGG: rsh:Rsph17029_2268 transcriptional regulator, XRE family. (86 aa)    
Predicted Functional Partners:
Mpop_4742
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sme:SMc00089 hypothetical protein.
 
   
 0.928
Mpop_4380
TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: mex:Mext_3908 addiction module antitoxin, RelB/DinJ family.
 
 
 0.838
Mpop_3164
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.650
Mpop_5287
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.650
Mpop_0928
KEGG: gox:GOX2726 hypothetical protein.
 
 
 
 0.616
Mpop_1667
KEGG: mex:Mext_1572 helix-turn-helix domain protein.
   
 
 0.560
Mpop_4312
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: swi:Swit_0156 transcriptional regulator-like protein.
   
 
 0.560
Mpop_5216
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: hne:HNE_1687 hypothetical protein.
   
 
 0.560
Mpop_4744
PFAM: Squalene/phytoene synthase; KEGG: mex:Mext_4225 squalene/phytoene synthase.
       0.551
Mpop_4745
PFAM: protein of unknown function DUF498; KEGG: mex:Mext_4226 protein of unknown function DUF498.
       0.492
Your Current Organism:
Methylorubrum populi
NCBI taxonomy Id: 441620
Other names: M. populi BJ001, Methylobacterium populi BJ001, Methylobacterium sp. BJ001, Methylorubrum populi BJ001
Server load: low (28%) [HD]