STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH47520.1Protein of unknown function. (179 aa)    
Predicted Functional Partners:
SFH47507.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.773
SFI04369.1
Mn-containing catalase.
 
   
 0.624
SFH47537.1
DNA polymerase-2.
       0.591
SFI08743.1
PRC-barrel domain-containing protein.
  
     0.543
SFI08719.1
Hypothetical protein.
  
     0.530
SFH19422.1
Undecaprenyl-diphosphatase.
  
     0.520
SFH69798.1
Uncharacterized conserved protein YafD, endonuclease/exonuclease/phosphatase (EEP) superfamily.
 
     0.488
SFH27680.1
Protein of unknown function.
  
    0.486
SFH46844.1
Uncharacterized conserved protein YafD, endonuclease/exonuclease/phosphatase (EEP) superfamily.
 
     0.467
SFH65623.1
Ion channel.
 
     0.465
Your Current Organism:
Halomonas xianhensis
NCBI taxonomy Id: 442341
Other names: CGMCC 1.6848, H. xianhensis, Halomonas sp. A-1, Halomonas xianhensis Zhao et al. 2012, JCM 14849, strain A-1
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