STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH86929.1Transcriptional regulator, NifA subfamily, Fis family. (526 aa)    
Predicted Functional Partners:
SFH91837.1
PAS domain S-box-containing protein.
   
 0.912
SFH39694.1
PAS domain S-box-containing protein.
   
 0.885
SFH67043.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.817
SFH79365.1
Two-component system, NarL family, sensor histidine kinase BarA.
   
 0.802
SFH35773.1
PAS domain S-box-containing protein.
  
 0.780
SFI10545.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.727
SFH86918.1
Nitric oxide dioxygenase; Belongs to the globin family.
     
 0.714
SFH19517.1
Signal transduction histidine kinase.
  
 0.708
SFH19695.1
Signal transduction histidine kinase.
   
 0.690
SFH28408.1
Signal transduction histidine kinase.
   
 0.690
Your Current Organism:
Halomonas xianhensis
NCBI taxonomy Id: 442341
Other names: CGMCC 1.6848, H. xianhensis, Halomonas sp. A-1, Halomonas xianhensis Zhao et al. 2012, JCM 14849, strain A-1
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