STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_2721PFAM: peptidase C1A papain; KEGG: gbm:Gbem_3867 peptidase C1A papain. (667 aa)    
Predicted Functional Partners:
GM18_1484
KEGG: gem:GM21_2561 type I citrate synthase; PFAM: Citrate synthase; Belongs to the citrate synthase family.
    
 
 0.787
GM18_2722
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: gsu:GSU0716 hypothetical protein.
   
 
 0.744
GM18_2778
PFAM: PEBP family protein; KEGG: gur:Gura_1648 PEBP family protein.
   
 
 0.668
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
 0.654
GM18_2400
TIGRFAM: redox-active disulfide protein 2; KEGG: gem:GM21_1877 redox-active disulfide protein 2.
    
 0.646
GM18_1198
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
 0.634
GM18_4432
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
 0.634
GM18_1573
PFAM: polysaccharide deacetylase; KEGG: nde:NIDE2698 hypothetical protein.
  
     0.616
GM18_1572
Hypothetical protein; KEGG: tkm:TK90_2511 FemAB-related protein, PEP-Cterm system-associated.
  
     0.576
GM18_0105
PFAM: multicopper oxidase type 2; KEGG: gbm:Gbem_4007 multicopper oxidase type 2.
   
 
 0.571
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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