STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_2916KEGG: cpb:Cphamn1_1672 hypothetical protein. (604 aa)    
Predicted Functional Partners:
GM18_2915
KEGG: cpb:Cphamn1_1671 helicase domain protein; PFAM: helicase domain protein; SMART: DEAD-like helicase.
 
     0.950
GM18_2917
Hypothetical protein; Manually curated; KEGG: cpb:Cphamn1_1673 hypothetical protein.
 
     0.950
GM18_2918
PFAM: Protein of unknown function DUF3553; KEGG: dar:Daro_0659 hypothetical protein.
 
     0.850
GM18_2914
KEGG: sfu:Sfum_3855 hypothetical protein.
       0.773
GM18_2768
PFAM: Integrase catalytic region; KEGG: gur:Gura_1623 integrase catalytic subunit.
  
     0.665
GM18_2988
KEGG: dbr:Deba_2565 hypothetical protein.
  
     0.625
GM18_2989
KEGG: dbr:Deba_2566 hypothetical protein.
  
     0.575
GM18_4372
PFAM: Protein of unknown function DUF3018; KEGG: plt:Plut_1918 hypothetical protein.
  
     0.547
GM18_2838
KEGG: gbm:Gbem_0973 hypothetical protein.
  
     0.529
GM18_1224
KEGG: gem:GM21_2921 hypothetical protein.
  
     0.523
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.