STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_3033KEGG: gem:GM21_1205 hypothetical protein. (1149 aa)    
Predicted Functional Partners:
GM18_3030
KEGG: gem:GM21_1208 type VI secretion protein, EvpB/VC_A0108 family; TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877.
 
  
 0.974
GM18_3034
KEGG: gbm:Gbem_3046 hypothetical protein; TIGRFAM: type IV / VI secretion system protein, DotU family; PFAM: Type IV / VI secretion system, DotU.
 
 
 0.969
GM18_3035
KEGG: gem:GM21_1203 type VI secretion protein, VC_A0114 family; TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876.
 
  
 0.968
GM18_3031
KEGG: gem:GM21_1207 type VI secretion protein, VC_A0107 family; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: Uncharacterised conserved protein UCP028301.
 
  
 0.965
GM18_3032
KEGG: gem:GM21_1206 type VI secretion-associated protein, ImpA family; TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein.
 
  
 0.965
GM18_3025
TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; KEGG: gbm:Gbem_3035 type VI secretion system Vgr family protein.
 
  
 0.952
GM18_3029
KEGG: gem:GM21_1209 type VI secretion system effector, Hcp1 family; TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796.
 
  
 0.942
GM18_3027
KEGG: gbm:Gbem_3039 type VI secretion protein, VC_A0110 family; TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879.
 
  
 0.941
GM18_3026
KEGG: gem:GM21_1212 type VI secretion protein, VC_A0111 family; TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305.
 
  
 0.933
GM18_3028
KEGG: gbm:Gbem_3040 type VI secretion system lysozyme-related protein; TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein.
 
  
 0.933
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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