STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_3668PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_0684 methylmalonyl-CoA decarboxylase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)    
Predicted Functional Partners:
GM18_1288
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: gem:GM21_1381 butyryl-CoA dehydrogenase.
 
 0.983
GM18_2109
KEGG: gbm:Gbem_2127 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase-like; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.973
GM18_0958
PFAM: AMP-dependent synthetase and ligase; KEGG: gme:Gmet_2340 AMP-dependent synthetase and ligase.
  
 0.949
GM18_4130
KEGG: gme:Gmet_0804 alcohol dehydrogenase; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein.
  
 0.918
GM18_1953
TIGRFAM: phosphate acetyltransferase; KEGG: gbm:Gbem_2276 phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase.
    
 0.907
GM18_3797
KEGG: gbm:Gbem_0558 methylmalonyl-CoA epimerase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
    
 0.906
GM18_3514
PFAM: DRTGG domain protein; KEGG: gem:GM21_3278 BioD-like protein N-terminal domain of phosphotransacetylase-like protein.
     
 0.902
GM18_2747
Acyl transferase; KEGG: amd:AMED_4604 type I polyketide synthase; PFAM: Acyl transferase; short-chain dehydrogenase/reductase SDR; Beta-ketoacyl synthase; 2-nitropropane dioxygenase NPD; phosphopantetheine-binding; SMART: Polyketide synthase, acyl transferase domain; Polyketide synthase/Fatty acid synthase, KR.
  
 0.897
GM18_0385
PFAM: Thiolase-like; KEGG: geo:Geob_0172 thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.874
GM18_1285
TIGRFAM: acetyl-CoA acetyltransferase; KEGG: gbm:Gbem_2835 acetyl-CoA acetyltransferase; PFAM: Thiolase-like; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.874
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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