STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (635 aa)    
Predicted Functional Partners:
GM21_1746
Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: gbm:Gbem_2471 porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
 
  
 0.965
GM21_2324
Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: gbm:Gbem_1886 arginase; Belongs to the arginase family.
  
 
 0.938
GM21_1308
Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
 
  
 0.843
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: gbm:Gbem_3641 argininosuccinate lyase.
     
 0.838
GM21_1307
PFAM: Saccharopine dehydrogenase; KEGG: gbm:Gbem_2918 saccharopine dehydrogenase.
 
   
 0.798
GM21_1306
Transcriptional regulator, XRE family; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gbm:Gbem_2919 transcriptional regulator, XRE family.
       0.582
GM21_1745
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gbm:Gbem_2472 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
   
 0.542
GM21_1155
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: gbm:Gbem_3107 malonyl CoA-acyl carrier protein transacylase.
   
    0.483
GM21_0557
PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: gbm:Gbem_0545 arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
  
  
 0.461
gpsA
PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; NADP oxidoreductase coenzyme F420-dependent; KEGG: gbm:Gbem_0008 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
    0.440
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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