STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmhAPhosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate. (192 aa)    
Predicted Functional Partners:
GM21_1713
TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: gbm:Gbem_2506 D,D-heptose 1,7-bisphosphate phosphatase.
  
 0.999
hldE
rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
  
 0.997
GM21_3406
PFAM: glycosyl transferase family 9; KEGG: gbm:Gbem_0860 lipopolysaccharide heptosyltransferase II.
 
   
 0.872
GM21_3404
TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: gme:Gmet_2331 lipopolysaccharide heptosyltransferase I.
 
   
 0.825
GM21_3411
TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: gbm:Gbem_0849 lipopolysaccharide heptosyltransferase II.
 
   
 0.811
GM21_2231
PFAM: glycosyl transferase family 9; KEGG: gbm:Gbem_1989 glycosyl transferase family 9.
 
   
 0.804
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
    
 
 0.792
GM21_0929
PFAM: Chromosomal replication initiator DnaA; KEGG: gbm:Gbem_3317 chromosomal replication initiator DnaA; Belongs to the DnaA family.
    
 
 0.792
GM21_1654
PFAM: glycosyl transferase family 9; KEGG: oca:OCAR_5523 glycosyl transferase, family 9.
 
   
 0.783
GM21_1711
PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_2508 glycosyl transferase family 2.
       0.644
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.