STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_1873TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: gbm:Gbem_2349 arsenical-resistance protein. (352 aa)    
Predicted Functional Partners:
GM21_1874
PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: gbm:Gbem_2348 protein tyrosine phosphatase.
 
  
 0.947
GM21_1872
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: gbm:Gbem_2350 transcriptional regulator, ArsR family.
 
  
 0.755
GM21_1875
PFAM: permease; KEGG: glo:Glov_1178 permease.
  
  
 0.702
GM21_1877
TIGRFAM: redox-active disulfide protein 2; KEGG: geo:Geob_3502 redox-active disulfide protein 2.
     
 0.600
GM21_1876
KEGG: gbm:Gbem_2347 Co/Zn/Cd cation transporter-like protein.
       0.595
GM21_1878
PFAM: Thioredoxin domain; KEGG: geo:Geob_3503 thioredoxin domain protein; Belongs to the thioredoxin family.
     
 0.576
GM21_1879
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: glo:Glov_1186 cytochrome c biogenesis protein transmembrane region.
     
 0.543
GM21_2939
Transcriptional regulator, ArsR family; PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; regulatory protein ArsR; Methyltransferase type 12; SMART: regulatory protein ArsR; KEGG: gbm:Gbem_1345 transcriptional regulator, ArsR family.
  
  
 0.480
GM21_2052
KEGG: gbm:Gbem_2170 copper-translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; YHS domain protein; Haloacid dehalogenase domain protein hydrolase; SMART: TRASH domain protein.
  
  
 0.461
GM21_1871
PFAM: Ferritin Dps family protein; KEGG: gbm:Gbem_0131 hypothetical protein.
       0.409
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.