STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_2472TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: gbm:Gbem_1775 FemAB-related protein, PEP-Cterm system-associated. (344 aa)    
Predicted Functional Partners:
GM21_2473
TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; KEGG: gbm:Gbem_1774 polysaccharide deactylase family protein, PEP-Cterm locus subfamily.
 
   
 0.951
GM21_2459
PFAM: O-antigen polymerase; KEGG: gbm:Gbem_1788 O-antigen polymerase.
 
   
 0.910
GM21_2469
TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; KEGG: gbm:Gbem_1778 asparagine synthase (glutamine-hydrolyzing).
 
     0.893
GM21_2465
PFAM: polysaccharide deacetylase; KEGG: gbm:Gbem_1782 polysaccharide deacetylase.
 
   
 0.887
GM21_2466
KEGG: gbm:Gbem_1781 hypothetical protein.
 
     0.883
GM21_2460
PFAM: glycosyl transferase group 1; KEGG: ppd:Ppro_2463 glycosyl transferase, group 1.
 
     0.871
GM21_2477
TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; KEGG: gbm:Gbem_1770 polysaccharide chain length determinant protein, PEP-Cterm locus subfamily.
 
   
 0.857
GM21_2467
PFAM: glycosyl transferase group 1; KEGG: gbm:Gbem_1780 glycosyl transferase group 1.
 
     0.853
GM21_2470
PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1777 glycosyl transferase family 2.
 
   
 0.840
GM21_2475
TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: AAA ATPase; KEGG: gbm:Gbem_1772 secretion ATPase, PEP-Cterm locus subfamily.
 
     0.828
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.