STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmoAMethyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). (244 aa)    
Predicted Functional Partners:
cmoB
Methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
 
 0.984
GM21_2573
PFAM: protein of unknown function UPF0153; KEGG: gbm:Gbem_1640 protein of unknown function UPF0153.
  
     0.618
GM21_2986
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gbm:Gbem_1297 HAD-superfamily hydrolase, subfamily IA, variant 3.
 
     0.543
GM21_2879
KEGG: gbm:Gbem_1404 hypothetical protein.
     
 0.530
GM21_2882
KEGG: gbm:Gbem_1401 hypothetical protein.
       0.488
GM21_0285
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: gbm:Gbem_0302 AMP-dependent synthetase and ligase.
 
   
 0.420
GM21_2878
PFAM: protein of unknown function DUF1568; KEGG: gbm:Gbem_1406 protein of unknown function DUF1568.
       0.406
GM21_2530
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gbm:Gbem_1691 methyltransferase type 11.
  
 
 0.405
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.