STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_3067Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (175 aa)    
Predicted Functional Partners:
GM21_2052
KEGG: gbm:Gbem_2170 copper-translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; YHS domain protein; Haloacid dehalogenase domain protein hydrolase; SMART: TRASH domain protein.
  
 0.979
GM21_2022
PFAM: manganese and iron superoxide dismutase; KEGG: gbm:Gbem_2204 manganese and iron superoxide dismutase.
   
 
 0.877
GM21_0910
PFAM: cytochrome c class I; KEGG: gbm:Gbem_3336 cytochrome c class I.
    
 
 0.825
GM21_0042
KEGG: gbm:Gbem_0043 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
    
 
 0.807
GM21_4141
TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: gbm:Gbem_4051 intracellular protease, PfpI family.
 
 
 0.804
GM21_3174
Cytochrome b/b6 domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 
 0.792
GM21_4115
PFAM: Cytochrome b/b6 domain; KEGG: gbm:Gbem_4024 cytochrome b/b6 domain protein.
    
 
 0.792
GM21_4114
KEGG: gbm:Gbem_4023 hypothetical protein.
    
 
 0.782
GM21_0045
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
 
 0.776
GM21_2851
PFAM: Rieske [2Fe-2S] domain protein; KEGG: gme:Gmet_2121 twin-arginine translocation pathway signal.
    
 
 0.775
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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