STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104585729(-)-germacrene D synthase-like. (564 aa)    
Predicted Functional Partners:
LOC104602023
Squalene synthase-like.
     
 0.907
LOC104591086
(3S,6E)-nerolidol synthase 1-like.
   
 
 
0.903
LOC104587019
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha.
     
  0.800
LOC104587193
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
     
  0.800
LOC104588689
Farnesyl pyrophosphate synthase 1-like; Belongs to the FPP/GGPP synthase family.
   
 
 0.728
LOC104594300
Farnesyl pyrophosphate synthase 1-like; Belongs to the FPP/GGPP synthase family.
   
 
 0.728
LOC104588101
Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic-like.
   
 
 0.646
LOC104595767
Geranylgeranyl pyrophosphate synthase, chloroplastic-like; Belongs to the FPP/GGPP synthase family.
   
 
 0.646
LOC104602603
Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic-like; Belongs to the FPP/GGPP synthase family.
   
 
 0.646
LOC104603687
Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic; Belongs to the FPP/GGPP synthase family.
   
 
 0.646
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.