STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104587241phenylalanine--tRNA ligase alpha subunit, cytoplasmic. (488 aa)    
Predicted Functional Partners:
LOC104589973
phenylalanine--tRNA ligase beta subunit, cytoplasmic-like isoform X1.
  
 0.999
LOC104600545
phenylalanine--tRNA ligase beta subunit, cytoplasmic-like.
  
 0.999
LOC104590565
phenylalanine--tRNA ligase, chloroplastic/mitochondrial isoform X1.
   
 
0.950
LOC104604212
aspartate--tRNA ligase, chloroplastic/mitochondrial.
  
  
 0.801
LOC104590895
Probable methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.799
LOC104602208
Probable methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.799
LOC104606270
DEAD-box ATP-dependent RNA helicase 16.
   
   0.768
LOC104589077
tyrosine--tRNA ligase 1, cytoplasmic-like; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.764
LOC104604419
Deoxyhypusine synthase.
   
  
 0.737
LOC104589945
isoleucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.732
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.