STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104585636cinnamoyl-CoA reductase-like SNL6. (307 aa)    
Predicted Functional Partners:
LOC104600524
40S ribosomal protein S29.
   
 0.822
LOC104598979
40S ribosomal protein S21-2-like isoform X1.
   
 0.801
LOC104607638
ubiquitin-60S ribosomal protein L40.
   
  0.724
LOC104609534
40S ribosomal protein S15 isoform X1; Belongs to the universal ribosomal protein uS19 family.
   
 0.701
LOC104612419
40S ribosomal protein S15-like; Belongs to the universal ribosomal protein uS19 family.
   
 0.701
LOC104589116
40S ribosomal protein S11-like; Belongs to the universal ribosomal protein uS17 family.
   
  0.699
LOC104604210
40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
   
  0.699
LOC104586441
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.689
LOC104587171
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.689
LOC104588658
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
   
 0.656
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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