STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104589451GATA transcription factor 26-like. (544 aa)    
Predicted Functional Partners:
LOC104611936
Uncharacterized protein LOC104611936 isoform X1.
  
 
  0.552
LOC104586036
Probable transcription factor At3g04930.
  
 
  0.487
LOC104608481
Pentatricopeptide repeat-containing protein At5g67570, chloroplastic.
  
     0.467
LOC104595058
Probable lysine-specific demethylase ELF6 isoform X1.
  
 0.461
LOC104586009
Ubiquitinyl hydrolase 1.
  
  
  0.453
LOC104609416
Ubiquitinyl hydrolase 1.
  
  
  0.453
LOC104606505
Uncharacterized protein LOC104606505.
  
     0.442
LOC104594113
Uncharacterized protein LOC104594113.
  
     0.428
LOC104610725
Reticulon-like protein.
  
 
   0.417
LOC104604445
Uncharacterized protein LOC104604445 isoform X1.
  
     0.415
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.