STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104589952Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (355 aa)    
Predicted Functional Partners:
LOC104605100
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.972
LOC104601469
60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.
  
 0.970
LOC104605419
Uncharacterized protein LOC104605419.
  
 
 0.969
LOC104607638
ubiquitin-60S ribosomal protein L40.
   
 0.969
LOC104595885
Uncharacterized protein LOC104595885.
  
 
 0.968
LOC104586440
50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
   
 
 0.963
rpl2
Ribosomal protein L2.
  
 0.960
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
  
 
 0.952
LOC104586697
60S ribosomal protein L23A; Belongs to the universal ribosomal protein uL23 family.
  
 0.951
LOC104599273
60S ribosomal protein L23A; Belongs to the universal ribosomal protein uL23 family.
  
 0.951
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.