STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104593122L-tryptophan--pyruvate aminotransferase 1-like. (410 aa)    
Predicted Functional Partners:
LOC104589645
Tryptophan synthase alpha chain isoform X1; Belongs to the TrpA family.
     
 0.802
LOC104600681
Uncharacterized protein LOC104600681 isoform X1.
     
  0.800
LOC104600965
Tryptophan synthase.
     
  0.800
LOC104609565
Tryptophan synthase alpha chain; Belongs to the TrpA family.
     
  0.800
LOC104610958
Tryptophan synthase beta chain 2, chloroplastic-like.
     
  0.800
LOC104592313
Probable indole-3-pyruvate monooxygenase YUCCA4.
     
 0.694
LOC104595275
Probable indole-3-pyruvate monooxygenase YUCCA4.
     
 0.694
LOC104585760
Probable indole-3-pyruvate monooxygenase YUCCA10 isoform X1.
     
 0.682
LOC104588924
Flavin-containing monooxygenase.
     
 0.680
LOC104606786
Flavin-containing monooxygenase.
     
 0.680
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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