STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104589720Probable CCR4-associated factor 1 homolog 9. (280 aa)    
Predicted Functional Partners:
LOC104598503
CCR4-NOT transcription complex subunit 1 isoform X1.
   
 0.963
LOC104597703
General negative regulator of transcription subunit 3-like isoform X1.
    
 0.920
LOC104611168
CCR4-NOT transcription complex subunit 3-like isoform X1.
    
 0.920
LOC104594677
Probable NOT transcription complex subunit VIP2.
   
 0.911
LOC104596162
Probable NOT transcription complex subunit VIP2 isoform X1.
   
 0.911
LOC104612719
Probable NOT transcription complex subunit VIP2.
   
 0.911
LOC104590539
CCR4-NOT transcription complex subunit 11 isoform X1.
    
 0.894
LOC104594737
Uncharacterized protein LOC104594737 isoform X1.
    
 0.893
LOC104596120
Uncharacterized protein LOC104596120 isoform X1.
    
 0.893
LOC104599346
Uncharacterized protein LOC104599346.
    
 0.893
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.