STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104595377DEAD-box ATP-dependent RNA helicase 56. (428 aa)    
Predicted Functional Partners:
LOC104594587
THO complex subunit 4A-like isoform X1.
   
 0.988
LOC104599317
THO complex subunit 4A.
   
 0.988
LOC104607348
THO complex subunit 4D isoform X1.
   
 0.988
LOC104607288
THO complex subunit 2 isoform X1.
   
 0.966
LOC104606243
THO complex subunit 5B.
   
 0.949
LOC104589198
THO complex subunit 7B-like.
   
 0.944
LOC104594708
Protein MODIFIER OF SNC1 11 isoform X1.
   
 0.928
LOC104599322
Protein MODIFIER OF SNC1 11-like isoform X1.
   
 0.928
LOC104588549
THO complex subunit 3.
    
 0.921
LOC104592428
DEAD-box ATP-dependent RNA helicase 56-like.
  
  
 
0.900
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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