STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC10459309960S ribosomal protein L27a-3; Belongs to the universal ribosomal protein uL15 family. (146 aa)    
Predicted Functional Partners:
LOC104597915
60S ribosomal protein L39.
   
 0.987
LOC104605100
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.985
LOC104601469
60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.
   
 0.980
LOC104600524
40S ribosomal protein S29.
  
 
 0.974
LOC104596154
60S ribosomal protein L24.
   
 0.971
LOC104612724
60S ribosomal protein L24-like.
   
 0.971
LOC104586697
60S ribosomal protein L23A; Belongs to the universal ribosomal protein uL23 family.
  
 0.970
LOC104599273
60S ribosomal protein L23A; Belongs to the universal ribosomal protein uL23 family.
  
 0.970
LOC104589599
60S ribosomal protein L3-like; Belongs to the universal ribosomal protein uL3 family.
  
 0.969
LOC104598979
40S ribosomal protein S21-2-like isoform X1.
   
 
 0.969
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.