LOC104594092 protein (Nelumbo nucifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104594092

Katanin p60 ATPase-containing subunit A1; Belongs to the AAA ATPase family. (604 aa)

Predicted Functional Partners:

LOC104590030

0.875

LOC104604233

0.875

LOC104592563

0.874

LOC104610922

0.874

LOC104588047

0.842

LOC104606415

0.836

LOC104609868

0.836

LOC104594090

0.831

LOC104588420

0.830

LOC104613489

0.830

Your Current Organism:

Nelumbo nucifera

NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104588047	LOC104588420	A0A1U7Z0R8	A0A1U7YYJ7	Plant UBX domain-containing protein 4.	NPL4-like protein 1 isoform X1.	0.705
LOC104588047	LOC104594092	A0A1U7Z0R8	A0A1U7ZU97	Plant UBX domain-containing protein 4.	Katanin p60 ATPase-containing subunit A1; Belongs to the AAA ATPase family.	0.842
LOC104588047	LOC104610922	A0A1U7Z0R8	A0A1U8QBT6	Plant UBX domain-containing protein 4.	Ubiquitin thioesterase OTU1.	0.917
LOC104588047	LOC104613489	A0A1U7Z0R8	A0A1U8BDU4	Plant UBX domain-containing protein 4.	NPL4-like protein 1.	0.705
LOC104588420	LOC104588047	A0A1U7YYJ7	A0A1U7Z0R8	NPL4-like protein 1 isoform X1.	Plant UBX domain-containing protein 4.	0.705
LOC104588420	LOC104590030	A0A1U7YYJ7	A0A1U7ZGX2	NPL4-like protein 1 isoform X1.	26S proteasome non-ATPase regulatory subunit 4 homolog.	0.647
LOC104588420	LOC104592563	A0A1U7YYJ7	A0A1U7Z9Z9	NPL4-like protein 1 isoform X1.	Protein OS-9 homolog isoform X1.	0.557
LOC104588420	LOC104594090	A0A1U7YYJ7	A0A1U8Q283	NPL4-like protein 1 isoform X1.	Plant UBX domain-containing protein 3.	0.705
LOC104588420	LOC104594092	A0A1U7YYJ7	A0A1U7ZU97	NPL4-like protein 1 isoform X1.	Katanin p60 ATPase-containing subunit A1; Belongs to the AAA ATPase family.	0.830
LOC104588420	LOC104604233	A0A1U7YYJ7	A0A1U8AGP4	NPL4-like protein 1 isoform X1.	26S proteasome non-ATPase regulatory subunit 4 homolog.	0.647
LOC104588420	LOC104606415	A0A1U7YYJ7	A0A1U8ATW1	NPL4-like protein 1 isoform X1.	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.551
LOC104588420	LOC104609868	A0A1U7YYJ7	A0A1U8B581	NPL4-like protein 1 isoform X1.	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.551
LOC104588420	LOC104610922	A0A1U7YYJ7	A0A1U8QBT6	NPL4-like protein 1 isoform X1.	Ubiquitin thioesterase OTU1.	0.919
LOC104588420	LOC104613489	A0A1U7YYJ7	A0A1U8BDU4	NPL4-like protein 1 isoform X1.	NPL4-like protein 1.	0.900
LOC104590030	LOC104588420	A0A1U7ZGX2	A0A1U7YYJ7	26S proteasome non-ATPase regulatory subunit 4 homolog.	NPL4-like protein 1 isoform X1.	0.647
LOC104590030	LOC104594092	A0A1U7ZGX2	A0A1U7ZU97	26S proteasome non-ATPase regulatory subunit 4 homolog.	Katanin p60 ATPase-containing subunit A1; Belongs to the AAA ATPase family.	0.875
LOC104590030	LOC104604233	A0A1U7ZGX2	A0A1U8AGP4	26S proteasome non-ATPase regulatory subunit 4 homolog.	26S proteasome non-ATPase regulatory subunit 4 homolog.	0.900
LOC104590030	LOC104606415	A0A1U7ZGX2	A0A1U8ATW1	26S proteasome non-ATPase regulatory subunit 4 homolog.	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.991
LOC104590030	LOC104609868	A0A1U7ZGX2	A0A1U8B581	26S proteasome non-ATPase regulatory subunit 4 homolog.	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.991
LOC104590030	LOC104613489	A0A1U7ZGX2	A0A1U8BDU4	26S proteasome non-ATPase regulatory subunit 4 homolog.	NPL4-like protein 1.	0.647