STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104599966Carboxypeptidase SOL1 isoform X1. (485 aa)    
Predicted Functional Partners:
LOC104603738
Carboxypeptidase A6 isoform X1.
     
 0.742
LOC104592356
Photosystem II stability/assembly factor HCF136, chloroplastic.
     
 0.712
LOC104590425
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
   
 
 0.580
LOC104593318
AP-1 complex subunit gamma-2-like.
   
 
 0.580
LOC104602733
AP-1 complex subunit gamma-2-like.
   
 
 0.580
LOC104607908
AP-1 complex subunit gamma.
   
 
 0.580
LOC104590927
AP-1 complex subunit gamma-2-like.
   
 
 0.580
LOC104609371
Uncharacterized membrane protein C776.05.
      
 0.560
LOC104597544
Serine/threonine-protein kinase ppk30-like isoform X1.
    
 0.554
LOC104603524
Probable serine/threonine-protein kinase DDB_G0280111 isoform X1.
    
 0.554
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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