STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104603249Exosome complex component RRP41 homolog. (241 aa)    
Predicted Functional Partners:
LOC104600941
Exosome complex component RRP42.
 
 0.994
LOC104606335
Exosome complex component RRP43 isoform X1.
  
 0.991
LOC104590856
Exosome complex component RRP4 homolog.
   
 0.990
LOC104588279
Exosome complex exonuclease RRP46 homolog.
  
0.989
LOC104593200
Putative exosome complex component rrp40 isoform X1.
  
 0.989
LOC104602718
Exosome complex component CSL4.
   
 0.989
LOC104604096
Exosome complex component RRP45B-like.
  
 0.981
LOC104590025
Exosome complex component RRP45A-like isoform X1.
  
 0.980
LOC104603260
Nuclear nucleic acid-binding protein C1D.
   
 0.980
LOC104610942
Protein RRP6-like 3 isoform X1.
   
 0.975
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.