STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104606747LOW QUALITY PROTEIN: callose synthase 5. (1924 aa)    
Predicted Functional Partners:
LOC104590187
Annexin.
      
 0.731
LOC104605150
Annexin.
      
 0.731
LOC104605972
Annexin.
      
 0.731
LOC104607255
Annexin.
      
 0.731
LOC104608824
Annexin.
      
 0.731
LOC104590190
Annexin.
      
 0.731
LOC104610662
RAB6A-GEF complex partner protein 1-like.
      
 0.510
LOC104590004
Probable ribose-5-phosphate isomerase 4, chloroplastic.
      
 0.509
LOC104587207
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
      
 0.508
LOC104592380
NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.
   
 
 0.508
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.