STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104606164Uncharacterized protein OsI_027940. (177 aa)    
Predicted Functional Partners:
LOC104605465
Peptidyl-prolyl cis-trans isomerase CYP40.
   
 0.927
LOC104590354
Protein SGT1 homolog A.
    
 0.774
LOC104600236
Protein SGT1 homolog.
    
 0.774
LOC104590415
Uncharacterized protein LOC104590415.
   
 0.722
LOC104589805
Heat shock cognate protein 80.
   
 0.722
LOC104594214
Heat shock protein 90-6, mitochondrial-like.
   
 0.722
LOC104594303
Heat shock cognate protein 80-like.
   
 0.722
LOC104600195
Heat shock protein 83.
   
 0.722
LOC104600243
Heat shock protein 90-5, chloroplastic-like.
   
 0.722
LOC104597851
Heat shock protein 90-5, chloroplastic-like.
   
 0.722
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.