STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104604565Ras-related protein RABC2a-like. (211 aa)    
Predicted Functional Partners:
LOC104591446
Rab proteins geranylgeranyltransferase component; Substrate-binding subunit of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins; Belongs to the Rab GDI family.
     
 0.683
LOC104609784
Rab3 GTPase-activating protein non-catalytic subunit-like.
     
 0.681
LOC104611574
Rab3 GTPase-activating protein non-catalytic subunit-like isoform X1.
     
 0.681
LOC104593653
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
     
 0.597
LOC104608848
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
     
 0.597
LOC104588309
Uncharacterized protein LOC104588309 isoform X1.
    
 0.587
LOC104592783
Uncharacterized protein LOC104592783.
    
 0.587
LOC104597295
Rab3 GTPase-activating protein catalytic subunit isoform X1.
    
 0.587
LOC104612766
Uncharacterized protein LOC104612766 isoform X1.
    
 0.587
LOC104593972
Geranylgeranyl transferase type-2 subunit alpha 1.
    
 0.561
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.