STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104607239Uncharacterized protein LOC104607239; Belongs to the universal ribosomal protein uS5 family. (516 aa)    
Predicted Functional Partners:
LOC104610663
28S ribosomal protein S29, mitochondrial isoform X1.
   
 0.999
LOC104605419
Uncharacterized protein LOC104605419.
   
 0.998
rps2
30S ribosomal protein S2, chloroplastic.
  
 0.998
LOC104594356
Uncharacterized protein LOC104594356.
   
 0.997
LOC104594372
LOW QUALITY PROTEIN: uncharacterized protein LOC104594372.
   
 0.997
rps12
30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits.
  
 0.997
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
  
 0.997
LOC104587393
30S ribosomal protein S9, chloroplastic-like; Belongs to the universal ribosomal protein uS9 family.
  
 0.994
LOC104611591
37S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
  
 0.994
LOC104612663
30S ribosomal protein S9, chloroplastic-like; Belongs to the universal ribosomal protein uS9 family.
  
 0.994
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.